Author Archives: samesense

About samesense

Computational biologist at a children's hospital

Reduce Snakemake runtime by collapsing similar jobs into one multiprocessing job

Snakemake is a pipeline management system written in Python. It enables users to encode tasks as rules that describe how to create output files from input files. These rules are written in a Snakefile (similar to a makefile), and are chained … Continue reading

Posted in Uncategorized | Leave a comment